PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G136800.1.p
Common NameGLYMA_03G136800, LOC102660547
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 657aa    MW: 75412.4 Da    PI: 6.9332
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G136800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.71e-0961134289
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          +Y +YA+++GF + +++skk  ++g+++   +vCs+  +++                +  C a+++++++kdg+++++   l H+Hel
  Glyma.03G136800.1.p  61 YYTKYAHQMGFGIMTRTSKKG-HDGKVKYLILVCSEITRSDA-------------LRKQYCAARINLTLRKDGTYRINAATLGHSHEL 134
                          79************9998887.8999********97655544.............45569***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-661134IPR004330FAR1 DNA binding domain
PfamPF105517.2E-29236330IPR018289MULE transposase domain
PROSITE profilePS5096610.472520558IPR007527Zinc finger, SWIM-type
PfamPF044347.0E-7532555IPR007527Zinc finger, SWIM-type
SMARTSM005753.4E-7533560IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MGELYHSHAP LDINSSGSEE NLISHSPEEI KLEPISFDEN DACPVPRPGM VFSSEAEARF  60
YYTKYAHQMG FGIMTRTSKK GHDGKVKYLI LVCSEITRSD ALRKQYCAAR INLTLRKDGT  120
YRINAATLGH SHELGSHHLL SSDIEMRGKR TLDQEVIDMG VNRISYKNEC RNHLQKERHL  180
IGENGDGEAL QKYLVRMQEQ DGNFFYAIDL DDFFRVRNVF WADGRSRAAY ESFGDVVTVD  240
TTCLSNRYKV PLVTFVGVNH HGQSVLFGCG LLSCEDSESF TWLFQSLLHC MSGVPPQGII  300
TDHCCKAMQK AVETVYPSTR HRWCLSNIME KLPQLIHGHA NYKSLRNRLK NVVYDAPTTS  360
EFEGKWKKIV EDFDLKDNKW LKELFLERHC WAPSFVRGEF WAGMSINPHS ESMHAFFDGY  420
VSRQTTLKQF VDQYDHALQY KAEKEYIADI HSSNNSQACV TKSPIERQFQ SAYTHAKFLE  480
VQHEFVGKAD CNVSVASDDG SVCCYNVIED VIIEDKPKES VVEVIYNRVD CDVKCSCRLF  540
EFRGILCRHS LAVLSQERVK EVPCKYILDR WRKNIRRKYA YTKTSYGVQH FEPHGQRLEL  600
LCNQFNSIAA VAAEFEDTSS FVKDNLCNLK EKLETWTTLL RKSSQVDVEK SNYMID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G136800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576823.10.0protein FAR1-RELATED SEQUENCE 6 isoform X2
RefseqXP_028225300.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_028225301.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A445LBS50.0A0A445LBS5_GLYSO; Protein FAR1-RELATED SEQUENCE 6
TrEMBLK7KEW00.0K7KEW0_SOYBN; Uncharacterized protein
STRINGGLYMA03G29310.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.17e-97FAR1-related sequence 6