PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G137500.1.p
Common NameGLYMA_03G137500, LOC100806459
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 293aa    MW: 32470 Da    PI: 8.7419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G137500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033228250223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +Cp Cg  Fs+   L+ H ++ H
  Glyma.03G137500.1.p 228 QCPQCGSKFSSVTALVDHVQKvH 250
                          7******************9988 PP
2zf-C2H211.20.0012265286323
                          ETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                          Cp+C++ F ++ +L+ H  + H
  Glyma.03G137500.1.p 265 CPKCSRGFLDPVSLVEHVERdH 286
                          *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.32E-12460No hitNo description
Gene3DG3DSA:4.10.1110.104.2E-101053IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.4741059IPR000058Zinc finger, AN1-type
SMARTSM001543.1E-41352IPR000058Zinc finger, AN1-type
PfamPF014282.4E-131351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.8E-1091148IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.45E-893143No hitNo description
PROSITE profilePS510397.69998147IPR000058Zinc finger, AN1-type
SMARTSM001540.12101142IPR000058Zinc finger, AN1-type
PfamPF014283.5E-8101141IPR000058Zinc finger, AN1-type
SMARTSM003550.0064227250IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452227255IPR007087Zinc finger, C2H2
PfamPF138946.6E-4228250No hitNo description
PROSITE patternPS000280229250IPR007087Zinc finger, C2H2
SMARTSM0035517263286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVSYCKQ LDFLPFTCDR CNQIYCLEHR GYIKHKCTKA NKHDVTVAIC  60
PLCAKGVRLI PDQDPNITWD NHVNVDCDPS NYEKITKKRK CPAPGCKEVL VFSNTIKCRD  120
CLKDHCLKHR FGPDHKCSGP KKLETSFSFM SLLNRSRKEE PKPNLTSTAP SKWSSSFLKV  180
ASNIRASAQV SMSKLGDEIN QVWQAATTRD GVGQSSGSGN RNDHQVEQCP QCGSKFSSVT  240
ALVDHVQKVH ERNGNRLGVK KIDACPKCSR GFLDPVSLVE HVERDHGGGS RA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.371800.0root
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G137500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958190.0BT095819.1 Soybean clone JCVI-FLGm-19N16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239954.10.0uncharacterized protein LOC100806459
SwissprotQ8VZ421e-117SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLC6TE010.0C6TE01_SOYBN; Uncharacterized protein
STRINGGLYMA03G29400.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Representative plantOGRP19091520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-119C2H2 family protein