PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G141200.5.p
Common NameGLYMA_03G141200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 258aa    MW: 27647.1 Da    PI: 7.8967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G141200.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.5e-07216242430
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                          +h+ +Er RR++iN ++  L+el+P +
  Glyma.03G141200.5.p 216 SHSLAERARREKINARMKLLQELVPGC 242
                          8************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-8210253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.16E-5210244No hitNo description
PROSITE profilePS5088811.274212257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-8216253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-5216242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDQAPGGLRG SVHDGATLES IQFNEEIQGI MAPVPAPENA NSFTALLELP PTQAVELLHS  60
PESDSARKPP NCHVSANQKP YLPNSFGSNL TFPSNAALIE RAAKFSVFAG ENSPLPPEEA  120
CLVPAGTGSV SNLDRVKNEP QETDSNPCSS SRLGCISDPA VENNNQRTAK RKEREKKLTV  180
KGSSKKSKSI ADETSGDGEK LPYVHVRVRR GQATDSHSLA ERARREKINA RMKLLQELVP  240
GCDKVGLSSF VVLTLKP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.344840.0hypocotyl| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G141200.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6172390.0FJ617239.1 Glycine max bHLH transcription factor PTF1 (PTF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521193.11e-173transcription factor bHLH48 isoform X2
RefseqXP_028225345.11e-173transcription factor bHLH48-like isoform X2
SwissprotQ3EAI12e-57BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A0R0KP380.0A0A0R0KP38_SOYBN; Uncharacterized protein
STRINGGLYMA03G29710.11e-172(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.22e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]