PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G152800.3.p
Common NameGLYMA_03G152800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 401aa    MW: 45044.1 Da    PI: 6.2808
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G152800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.12.1e-15239286355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++h ++Er RR+++N++f  Lr+++P+      ++++Ka+iL  ++eYIk+L+
  Glyma.03G152800.3.p 239 TSHVMAERHRREKLNERFLILRSMVPSV-----TRMDKASILGDTIEYIKQLR 286
                          79*************************8.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.964236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-18238300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-13239285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-18239298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.94E-14239290No hitNo description
SMARTSM003532.8E-17242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEEDLNFIQH IKSFFIDQQH PALTAKPALS EQYSTSKPTS SSSSYPLVTA NNTIPIQNIV  60
DRGEAIILNN NTKEAELAVP NSSFIPSELM ELDATLEEFR VGSSGDGSNH LDSFPTEKSM  120
ALCSAGLELL QLQLPPAPAH PPTENLAQGG TDTHYSQTVS SILQKNSRRW PESPSLNLLT  180
DSFQSAFNKW NSGADDYQHH FHVSVASVTS QWLLKYILFS VPYLHTNWLK GKGTSPYETS  240
HVMAERHRRE KLNERFLILR SMVPSVTRMD KASILGDTIE YIKQLRDKIE SLEARKRLTG  300
KRRMRQVEVS IIESEALLEV ECVHREGLLL DLMTKLRELG VEVMMVQSWV KDDGVFVAEM  360
RAMVRENGNG IKASVIEVKN ALNQIIPRHE PYTLASSDHF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-15240311878Transcription factor MYC2
5gnj_B4e-15240311878Transcription factor MYC2
5gnj_E4e-15240311878Transcription factor MYC2
5gnj_F4e-15240311878Transcription factor MYC2
5gnj_G4e-15240311878Transcription factor MYC2
5gnj_I4e-15240311878Transcription factor MYC2
5gnj_M4e-15240311878Transcription factor MYC2
5gnj_N4e-15240311878Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G152800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2208500.0KF220850.1 Glycine max cultivar Williams 82K clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208510.0KF220851.1 Glycine max cultivar Sowon clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208520.0KF220852.1 Glycine max cultivar Pureun clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208540.0KF220854.1 Glycine max cultivar Ilpumgeomjeong clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208550.0KF220855.1 Glycine max cultivar Seoritae clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208560.0KF220856.1 Glycine max cultivar PI96983 clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208590.0KF220859.1 Glycine max cultivar Hwangkeum clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208600.0KF220860.1 Glycine soja cultivar IT162825 clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208610.0KF220861.1 Glycine soja cultivar IT178480 clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520564.10.0basic helix-loop-helix protein A
RefseqXP_028225478.10.0basic helix-loop-helix protein A-like
SwissprotE3SXU41e-101BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0R0KJN00.0A0A0R0KJN0_SOYBN; Uncharacterized protein
TrEMBLA0A445LDA00.0A0A445LDA0_GLYSO; Basic helix-loop-helix protein A isoform C
STRINGGLYMA03G30940.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-53bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]