PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G160700.1.p
Common NameGLYMA_03G160700, LOC102666850
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 206aa    MW: 22739 Da    PI: 9.1567
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G160700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000132345123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C+ C++ F++   L  H+++H
  Glyma.03G160700.1.p 23 YACSFCKREFKSAQALGGHMNVH 45
                         89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.24E-62049No hitNo description
Gene3DG3DSA:3.30.160.608.3E-42148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00792345IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-62346IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1362350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEGNFLTRNR FGFEEHSWPT RNYACSFCKR EFKSAQALGG HMNVHRRDRA RLRSCLPPSS  60
WVSECPNKPN SIKPNPTHLS PSSPSSLCLS NNLLNCAHTF PLYSPSLTLS SSLTPASPNG  120
DNKPRRVSPD PHLLPLLIPQ SSEEIKMNKN KVSGLGVEEV QGCAIGEKLK VFKTSTSEHN  180
IKLELGIGLL KQPEMLDLEL RLGHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-111845229superman protein
2l1o_A3e-111845229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G160700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576926.11e-148transcriptional regulator SUPERMAN
RefseqXP_028223815.11e-148transcriptional regulator SUPERMAN-like
TrEMBLA0A445LC691e-147A0A445LC69_GLYSO; Transcriptional regulator SUPERMAN
TrEMBLK7KFD71e-147K7KFD7_SOYBN; Uncharacterized protein
STRINGGLYMA03G31753.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.16e-19C2H2 family protein