PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G161500.1.p
Common NameGLYMA_03G161500, LOC100816960
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 213aa    MW: 23472.3 Da    PI: 6.224
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G161500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.79.5e-3971071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++Cv+apyf++eq   +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lq+q+ +
  Glyma.03G161500.1.p   7 PCGACKFLRRKCVRGCVFAPYFCHEQgVTHFAAIHKVFGASNVSKLLAHLPVSDRCEATVTISYEAQARLQDPIYGCVAHIFALQEQVVN 96 
                          7*************************77************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a+la+l+e+
  Glyma.03G161500.1.p  97 LQAQLAYLREQ 107
                          *******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0266108IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-367105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGVTHFAAI HKVFGASNVS KLLAHLPVSD  60
RCEATVTISY EAQARLQDPI YGCVAHIFAL QEQVVNLQAQ LAYLREQAGQ IYLNASATEN  120
PNEKLLGKPT TFPQDLQSRF QMENSNMASQ FLPNLSTNPS THYYGNTNSL MEPNPIGNYE  180
SSGTVEESIS FSSFEESCNS MSYDMQRQWG LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3531017104LOB family transfactor Ramosa2.1
5ly0_B4e-3531017104LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G161500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0921570.0BT092157.1 Soybean clone JCVI-FLGm-10A4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028225570.11e-159LOB domain-containing protein 29-like
SwissprotQ9M2J77e-67LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A445LCY51e-158A0A445LCY5_GLYSO; LOB domain-containing protein 29
TrEMBLI1JP231e-158I1JP23_SOYBN; Uncharacterized protein
STRINGGLYMA03G31860.11e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.15e-69lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Gupta A,Singh M,Laxmi A
    Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis.
    Plant Physiol., 2015. 168(1): p. 307-20
    [PMID:25810094]
  2. Porco S, et al.
    Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3.
    Development, 2016. 143(18): p. 3340-9
    [PMID:27578783]
  3. Lee K,Seo PJ
    High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis.
    Planta, 2017. 246(4): p. 797-802
    [PMID:28766014]
  4. Xu C,Cao H,Xu E,Zhang S,Hu Y
    Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation.
    Plant Cell Physiol., 2018. 59(4): p. 744-755
    [PMID:29121271]
  5. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]