PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G161800.1.p
Common NameGLYMA_03G161800, LOC100776869
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 757aa    MW: 84288.1 Da    PI: 6.1703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G161800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000165836201355
                          HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          R+ i +++ eLrel+P+ a      K s  + Le+A++++  Lq
  Glyma.03G161800.1.p 583 RQLIQDRIKELRELVPNgA------KCSIDSLLERAIKHLLFLQ 620
                          67799************77......777778*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.4E-365166IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00176563620No hitNo description
PROSITE profilePS5088810.931570619IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-5583625IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-4583624IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0035556Biological Processintracellular signal transduction
GO:0005829Cellular Componentcytosol
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MGTNLHQVLR SLCLNTHWNY AIFWKLKHRA RMILTWEDAY YSNPDDYDSS ENKHCQKTLE  60
QIGCGKFSHS ALELAVAKMS YHAYSLGEGI IGQVAVTGKH RWICADNQVA GSGLSFEFAD  120
GWQSQFSAGI RTIAVVAVVP LGVVQLGSLN KVIEDMEFVT HIRNLFLSTQ NYSILRPSQI  180
QGSLKSSSEL DTLKENLSSD IMPTCFYDTQ KSMKSETADV LMPLQCSGTG RNYTPSAHEK  240
MSDNVAKQEG PELYNDESSI LLQSISNMMN VDCKEFEEMK PLYGMKYEGG SSGDCKDMRL  300
ESEKNVSSYL NDFVTDNASF NDLICPSEKV RVDSACFPSV FLDTVVCESD KLHYADINQK  360
GALNFAQPSE ANSQQHIEKS KFHTEPCYKD ISDFQTEPCY KDASQMLNFP AGCELHEALG  420
PAFSKVGKCF DWPTQVNQEM KPVEMSDEIS TSQLTSESCP EHLLEAMLVN INHSNNDVNS  480
ELSFCTSKQS AMASAKNHEA SIHNVHTINS EGYLMDQLSL VREDKHHSLS SSSGICGVMS  540
SKGVSSTFHS SNSGQLERSS EPSKNSKKRA RPGESCRPRP RDRQLIQDRI KELRELVPNG  600
AKCSIDSLLE RAIKHLLFLQ SITKHADKLT DFADTKSKLH HKEADILGSS SYDQGSSWAM  660
EVGGHLKVHS ILVENLGKNG QMLVEMLCEE CSHFLEIAEA IRSLGLTILK GATKAHGEKI  720
WICFVVEGQN NKNVHRLDIL WPLVQILQSK STVYSQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.613930.0root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G161800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520595.10.0transcription factor EMB1444 isoform X2
TrEMBLK7KFE00.0K7KFE0_SOYBN; Uncharacterized protein
STRINGGLYMA03G31876.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Representative plantOGRP995734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-141conserved peptide upstream open reading frame 7