PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G162700.1.p
Common NameGLYMA_03G162700, LOC100779524
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 243aa    MW: 27302.5 Da    PI: 5.4756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G162700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-17107156355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +g+++AeIrd + ng   r+++g+f+tae Aa a+++a+ + +g
  Glyma.03G162700.1.p 107 YRGVRKRP-WGKFAAEIRDSTRNG--VRVWIGTFDTAEAAALAYDQAAFSTRG 156
                          9*******.**********44465..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.721106164IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21106165IPR016177DNA-binding domain
SMARTSM003808.6E-35106170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-29106165IPR001471AP2/ERF domain
PfamPF008473.9E-12107156IPR001471AP2/ERF domain
PRINTSPR003672.2E-10107118IPR001471AP2/ERF domain
CDDcd000184.97E-19107165No hitNo description
PRINTSPR003672.2E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDLDFDSTFF LNQNLSFFPE NSSIFGDTFS WDYNFVLDDI FNNLSDNSSQ SQTKETSSAS  60
NVSSCIGSVE LQEVSSNTTY KEVKKVRPPP PSPPLPSQQV AKEPRMYRGV RKRPWGKFAA  120
EIRDSTRNGV RVWIGTFDTA EAAALAYDQA AFSTRGSLAV LNFPEEVVRE SLKDMPSKPW  180
EEGSSPVLAL KRKHTMRTKS NSKKKTKVDQ REQLDFSRTS QNVLVFEDLG AEYLEQLLTL  240
TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2897166574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G162700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520600.11e-179ethylene-responsive transcription factor 15
RefseqXP_028225581.11e-179ethylene-responsive transcription factor 15-like
SwissprotQ8VYM06e-54ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A445LCA01e-177A0A445LCA0_GLYSO; Ethylene-responsive transcription factor 15
TrEMBLI1JP311e-177I1JP31_SOYBN; Uncharacterized protein
STRINGGLYMA03G31940.11e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.17e-47ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]