PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G173300.1.p
Common NameGLYMA_03G173300, LOC100526897
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 159aa    MW: 17876.7 Da    PI: 9.5089
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G173300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000814769123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ Fs+   L  H  +H
  Glyma.03G173300.1.p 47 FECKTCNRKFSSFQALGGHRASH 69
                         89**********99999998887 PP
2zf-C2H2130.0003295117123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs    L  H+r+H
  Glyma.03G173300.1.p  95 HECSICGLEFSLGQALGGHMRKH 117
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.1E-114771IPR007087Zinc finger, C2H2
SMARTSM003550.194769IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.24E-847117No hitNo description
PROSITE profilePS5015710.6994774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PfamPF139121.1E-995119IPR007087Zinc finger, C2H2
SMARTSM003550.1595117IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.1295117IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MNNNMLGMKR RRDDNEGSLD LAKCLMLFSC PIESNKTQQK SFGSVEFECK TCNRKFSSFQ  60
ALGGHRASHK RQKLEGEELK EQAKSLSLWN KPKMHECSIC GLEFSLGQAL GGHMRKHRAS  120
LNEGFPIIPS IDQVIAKIPV LKRSNSTRVM CLDLELHL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.558280.0flower| hypocotyl| leaf| meristem| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G173300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0917000.0BT091700.1 Soybean clone JCVI-FLGm-8J5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235663.11e-114C2H2-type zinc finger protein
RefseqXP_028225726.11e-114zinc finger protein ZAT11-like
SwissprotQ9SLD49e-35ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A445LCV71e-112A0A445LCV7_GLYSO; Zinc finger protein ZAT11
TrEMBLC6T2P11e-112C6T2P1_SOYBN; Uncharacterized protein
STRINGGLYMA03G33070.11e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-37C2H2 family protein