PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G177700.3.p
Common NameGLYMA_03G177700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 101aa    MW: 12127.2 Da    PI: 8.7193
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G177700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB81.11.4e-2543894894
                NF-YB 48 seasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94
                         + asdkcqrekrktingddllwa+atlGfedy++plk+yl++yre+e
  Glyma.03G177700.3.p 43 CRASDKCQREKRKTINGDDLLWAMATLGFEDYMDPLKIYLTRYREME 89
                         579******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008086.3E-54466IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.1E-204489IPR009072Histone-fold
SuperFamilySSF471136.28E-164489IPR009072Histone-fold
PRINTSPR006152.8E-104967No hitNo description
PRINTSPR006152.8E-106886No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MRLRVHQLHH QRVSVFFFSS DSFLLRFSYL SSPAFNLKFL EFCRASDKCQ REKRKTINGD  60
DLLWAMATLG FEDYMDPLKI YLTRYREMEV IFNIFILMIE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-1745875092Transcription factor HapC (Eurofung)
4g92_B4e-1745875092Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.598092e-72flower| leaf| pod| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G177700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521372.14e-27nuclear transcription factor Y subunit B-10
RefseqXP_028225788.14e-27nuclear transcription factor Y subunit B-10-like
SwissprotQ67XJ24e-26NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLA0A0R0KL057e-68A0A0R0KL05_SOYBN; Uncharacterized protein
STRINGGLYMA03G33490.12e-26(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.13e-28nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]