PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G189400.1.p
Common NameGLYMA_03G189400, LOC100806798
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 234aa    MW: 27315.9 Da    PI: 6.4081
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G189400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-1872126256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k+ ++t++q+e Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k
  Glyma.03G189400.1.p  72 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWK 126
                          57788*************************************************9 PP
2HD-ZIP_I/II119.61.7e-3872163192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekk+rl+++q++lLE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+ktkqlE+ y++Lk++yd +++e+++L++ev +L++ 
  Glyma.03G189400.1.p  72 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHLYDVLKHQYDVVSNEKQKLQEEVMKLKAM 161
                          69**************************************************************************************88 PP

          HD-ZIP_I/II  91 lk 92 
                          l+
  Glyma.03G189400.1.p 162 LS 163
                          76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1959130IPR009057Homeodomain-like
PROSITE profilePS5007118.25368128IPR001356Homeobox domain
SMARTSM003894.8E-1770132IPR001356Homeobox domain
CDDcd000863.88E-1671129No hitNo description
PfamPF000468.0E-1672126IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-2074135IPR009057Homeodomain-like
PRINTSPR000317.9E-599108IPR000047Helix-turn-helix motif
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PRINTSPR000317.9E-5108124IPR000047Helix-turn-helix motif
PfamPF021832.6E-9128162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MELKERDLDR ELETDMDWHH GTKPLVPRPE TLSFFYNYNY NSPYPGVEVK QAALMETGEG  60
SVPALMDSRN KEKKKRLTNN QIELLERSFQ EEIKLDPERK MKLSRELGLQ PRQIAVWFQN  120
RRTRWKTKQL EHLYDVLKHQ YDVVSNEKQK LQEEVMKLKA MLSKEQGFGK QTFGCYTEIS  180
GEETVESTSE GLTLRGKSNI EHVADQGYCS FTVEDYNTTV LLPPHCHWPA VPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRTRWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G189400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521430.21e-176homeobox-leucine zipper protein ATHB-22
TrEMBLK7KFW71e-174K7KFW7_SOYBN; Uncharacterized protein
STRINGGLYMA03G34710.21e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.16e-43homeobox 51