PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G189600.1.p
Common NameGLYMA_03G189600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 456aa    MW: 52151 Da    PI: 6.4708
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G189600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.43.8e-23114212186
             trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 
                          +Wt+ +v+ Li a+ +++++ +++             +kk++W++vs  m+e+g+ +sp+qC++k+++lnkryk+++++ +k+ ++++++
  Glyma.03G189600.1.p 114 KWTDTMVKFLIMAVYYIGDEAGSEGtdptkkkasgllQKKGKWKSVSGGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVE 203
                          7**************9998888643356677889999**********************************************55999** PP

             trihelix  78 tcpyfdqle 86 
                          +  ++d ++
  Glyma.03G189600.1.p 204 NQTLLDTMD 212
                          999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-20112237No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEPNALGGGI FPNISSGLLG VENPLQQQPN LQNQQNPHPL HHLQMVSYTT NHDTDTHHQQ  60
PPPQQSIKHG YNFSATKSNK SQITLSDEDE PVFTAEDNSS GDPKRKVSPW HRMKWTDTMV  120
KFLIMAVYYI GDEAGSEGTD PTKKKASGLL QKKGKWKSVS GGMMEKGYYV SPQQCEDKFN  180
DLNKRYKRVN DILGKGTACR VVENQTLLDT MDLSPKMKEE VRKLLNSKHL FFREMCAYHN  240
SCGHNNNNNC GSTSNVQQST DQPLHQHNHQ QQQCLHSSEN GVGSLRMLKE DEDEDIEDDD  300
SDEFSDEDED ESGEGGSRGM EEDENDHVMR KRARNKGGFG VSSISSQMMQ QLNGEVSGVL  360
QDGGKSAWEK KQWMKKKVVQ LEEQQVSYQM QAFEMEKQRL KWARFSSKKE REMEKDKLQN  420
ERKRLEIERM VLLLRHKELE LVNVQQQHQQ QHSST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G189600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973680.0BT097368.1 Soybean clone JCVI-FLGm-21N20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242801.20.0uncharacterized LOC100808934
RefseqXP_028225939.10.0transcription initiation factor TFIID subunit 7-like
TrEMBLA0A445LDV90.0A0A445LDV9_GLYSO; Uncharacterized protein
TrEMBLI1JPV40.0I1JPV4_SOYBN; Uncharacterized protein
STRINGGLYMA03G34730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Representative plantOGRP9974610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.19e-63sequence-specific DNA binding transcription factors