PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G208800.1.p
Common NameGLYMA_03G208800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 591aa    MW: 65327.9 Da    PI: 7.3281
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G208800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B382.54.1e-2649150199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f k+ltpsd++++g +++pkk+a+e+       ++++  ++++ +d++g +W++++iyr++++r++lt+GW+ Fv+a++L +gD+++F  
  Glyma.03G208800.1.p  49 FSKILTPSDTSTHGGFSVPKKYADECfppldmTLQTPA-QEIVAKDLNGFEWRFRHIYRGQPKRHLLTSGWSLFVNAKKLVAGDSCIFV- 136
                          88****************************98555444.59************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           + +++el+v+++r+
  Glyma.03G208800.1.p 137 -RGESGELRVGIRRA 150
                          .44999*******96 PP
2Auxin_resp74.53e-25177258183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a++a+ ++++F v+Y+P++ + eF+v+++ ++k++ + + +G+R++m+ e e+s +r l+Gt++g +d+d++rWp+S Wr Lk
  Glyma.03G208800.1.p 177 ASNAVGNRTMFLVYYRPWTNPFEFIVHLQTYLKSTLQDYPIGTRVQMQHEVEESLRR-LAGTIIGNEDIDSIRWPGSAWRRLK 258
                          678999**********************************************98765.5*********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-3636173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-3943160IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-2548149No hitNo description
SMARTSM010191.5E-2749151IPR003340B3 DNA binding domain
PfamPF023624.1E-2449150IPR003340B3 DNA binding domain
PROSITE profilePS5086314.01549151IPR003340B3 DNA binding domain
PfamPF065072.2E-24177258IPR010525Auxin response factor
PROSITE profilePS5174516.087494576IPR000270PB1 domain
SuperFamilySSF542779.81E-5498570No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MNVELKAEAY SDEVYAQVTL VPEVQKDNLC FEEEVNIDQI PSRNAAYSFS KILTPSDTST  60
HGGFSVPKKY ADECFPPLDM TLQTPAQEIV AKDLNGFEWR FRHIYRGQPK RHLLTSGWSL  120
FVNAKKLVAG DSCIFVRGES GELRVGIRRA AENLSNISQS SSLISGHSMQ LGILTNASNA  180
VGNRTMFLVY YRPWTNPFEF IVHLQTYLKS TLQDYPIGTR VQMQHEVEES LRRLAGTIIG  240
NEDIDSIRWP GSAWRRLKVQ WDAIVEDKMH PERVCPWWIE PLESAKEKKQ VPALPTKKKG  300
HALLNQRSLP GISGFGKNDV HQNSAGPSSQ TRRADGDLQG QDYSGLSPPQ PLQRAPSTDI  360
IRPSKVPIRG SRFGKENRNQ HPFLKQDPLH KSLGRSMSLT HEDLSITSSN LTSIGSESLG  420
MPSTESRDEN DAPFGQPGSS STFKLFGVNL IDSSPEIPSV NFVDLNKTSS LPSSPPMGVA  480
PGKTCKKCRC VNNRSCTKVL KLGNALGRAV DLARFNGYTE LIAELDSMFD FQGTLISGGS  540
GWHVTCLDDE GDMMQLGDYP WQDFLGVVQK MIICPKEGTD NLKPGSSANP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A3e-90128478357Auxin response factor 1
4ldw_A3e-90128478357Auxin response factor 1
4ldw_B3e-90128478357Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G208800.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025983699.10.0auxin response factor 23
TrEMBLI1JQG40.0I1JQG4_SOYBN; Auxin response factor
STRINGGLYMA03G36710.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Representative plantOGRP1325645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.21e-107auxin response factor 9