PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G209800.2.p
Common NameGLYMA_03G209800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 255aa    MW: 27669.1 Da    PI: 4.6217
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G209800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.6e-07448240
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         e+r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  Glyma.03G209800.2.p  4 EARSCDYCGHSTALLYCRADSAKLCFSCDREVHSTnqlfskHTRT 48
                         5789******99*********************668888888876 PP
2zf-B_box27.94.8e-095093542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                          C+ +++ ++++ C ++ + lC++C  e+H +       H+++pl
  Glyma.03G209800.2.p 50 LCDACDHSPATILCSTDTSVLCQNCDWEKH-NpalsdslHERRPL 93
                         7*****************************.54899999988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.239350IPR000315B-box-type zinc finger
SMARTSM003368.3E-15350IPR000315B-box-type zinc finger
PfamPF006431.0E-5548IPR000315B-box-type zinc finger
CDDcd000211.28E-6650No hitNo description
PROSITE profilePS5011910.1254693IPR000315B-box-type zinc finger
CDDcd000217.46E-55093No hitNo description
PfamPF006437.7E-75093IPR000315B-box-type zinc finger
SMARTSM003360.225193IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSGEARSCDY CGHSTALLYC RADSAKLCFS CDREVHSTNQ LFSKHTRTLL CDACDHSPAT  60
ILCSTDTSVL CQNCDWEKHN PALSDSLHER RPLEGFTGCP SVSELLSIVG FSDLSKKSLL  120
SSPQGSGADG IFGGEIEGLS DLFVWDSPSF VTLDDLISSS PSSHSFQAME VPPLPKNRKA  180
ACGQHKEEIL SQLRELAKSE PLDLEPYVSS GNLSSGFERE PEADIFPSHE VKLLLNLFCT  240
CVFLSKLVLM PDDG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.642380.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G209800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0688960.0HM068896.1 Glycine max CONSTANS-like zinc finger protein (COL15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001278943.11e-167zinc finger protein CONSTANS-LIKE 13-like
RefseqXP_028226195.11e-167zinc finger protein CONSTANS-LIKE 13-like
SwissprotO822562e-68COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLK7KG840.0K7KG84_SOYBN; Uncharacterized protein
STRINGGLYMA03G36810.11e-167(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.26e-67B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]