PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G217900.1.p
Common NameGLYMA_03G217900, LOC100799174
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 167aa    MW: 18989.5 Da    PI: 10.597
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G217900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-052345123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+++F ++  L  H++ H
  Glyma.03G217900.1.p 23 FRCHYCKRVFGNSQALGGHQNAH 45
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-41749IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.26E-61950No hitNo description
PfamPF139122.1E-52347IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2812350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSDETWPPKL FGFPLTEQED RKFRCHYCKR VFGNSQALGG HQNAHKKERQ RARRFQIHTH  60
RRAIAAAASI SSHAIITSVP SIYLRGHPPT PTSLLPIFDP HRQPNNTKHF PSRPTFIPSS  120
SNYHLTNYTQ CFPFRLYASP THVLQSSTPK VPHFSAEGEV DVHLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G217900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932080.0BT093208.1 Soybean clone JCVI-FLGm-17A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241325.11e-121C2H2-type zinc finger protein
TrEMBLC6T6Z11e-120C6T6Z1_SOYBN; Uncharacterized protein
STRINGGLYMA03G37610.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.13e-12C2H2 family protein