PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G221700.1.p
Common NameGLYMA_03G221700, GmMYB12a
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 238aa    MW: 27029.3 Da    PI: 9.1677
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G221700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-181360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT++Ed ll ++++ +G g+W+++ar+ g++Rt+k+c++rw++yl
  Glyma.03G221700.1.p 13 KGPWTEQEDSLLFNYITVHGEGHWNSVARYTGLKRTGKSCRLRWLNYL 60
                         79********************************************97 PP
2Myb_DNA-binding50.16.2e-1666109146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T +E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Glyma.03G221700.1.p  66 RGNITLQEQLLILDLHSRWGNR-WSKIAEHLP-GRTDNEIKNYWRT 109
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.193860IPR017930Myb domain
SMARTSM007178.7E-151262IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-2912107IPR009057Homeodomain-like
PfamPF002494.4E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-211467IPR009057Homeodomain-like
CDDcd001671.79E-111560No hitNo description
PROSITE profilePS5129422.87261115IPR017930Myb domain
SMARTSM007171.1E-1365113IPR001005SANT/Myb domain
PfamPF002492.0E-1466109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2168113IPR009057Homeodomain-like
CDDcd001671.98E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MERSSEEEML ITKGPWTEQE DSLLFNYITV HGEGHWNSVA RYTGLKRTGK SCRLRWLNYL  60
RPNVRRGNIT LQEQLLILDL HSRWGNRWSK IAEHLPGRTD NEIKNYWRTR VVKQAKQLKC  120
DVNSKQFRDT LRFVWMPRML ERIRAQASSS AQAHQSSLIS NSNTQAHSGL LSSALHAHAP  180
SLSDSSASYN LMGADAGSCS SHSYYSDIAG NGFGGADLWT DQNICFLQHQ LAHHDLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-241110725120MYB TRANSFORMING PROTEIN
1mse_C8e-2410107197C-Myb DNA-Binding Domain
1msf_C8e-2410107197C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.1630.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G221700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973790.0BT097379.1 Soybean clone JCVI-FLGm-16I17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242391.21e-178R2R3-type MYB transcription factor MYB12a
RefseqXP_028226355.11e-178transcription factor MYB2-like
SwissprotQ10MB44e-79MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A445LFI81e-177A0A445LFI8_GLYSO; Transcription factor MYB2
TrEMBLC5NU121e-177C5NU12_SOYBN; MYB12 transcription factor a
STRINGGLYMA03G38040.11e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.13e-75myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]