PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G224700.2.p
Common NameGLYMA_03G224700, LOC100817839
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 520aa    MW: 56271.7 Da    PI: 6.6375
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G224700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-30273331259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+rsa+d++v+++ Yeg+Hnh+
  Glyma.03G224700.2.p 273 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRSADDKTVLITSYEGNHNHP 331
                          7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-32257333IPR003657WRKY domain
SuperFamilySSF1182903.92E-27265333IPR003657WRKY domain
PROSITE profilePS5081129.78267333IPR003657WRKY domain
SMARTSM007744.3E-36272332IPR003657WRKY domain
PfamPF031062.1E-26274331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MPTLTIPIYF FFLFSLCISI SPNTYMDNRH HHREFTFLSS AHFLDHIDPP SIKEMDFFST  60
SSPRDHKNNT SSRDTNDDHY QNRDDQHDTH DRHGSPTRVI DHRVNTGLNL TCASAGVTKA  120
ENGENPETEL SSLESELLRL QEENNKLRNV LDHITKSYTQ LQAQLFIALQ NLPQNMETKI  180
VDPGTSRKLD VVNDASVSDE KTDQDVSVSR SNNAEACPDA AEDVLDRSSS QSWGSSKLEE  240
QPKTTAEQLP ADQIPLRKAR VSVRARSEAP MISDGCQWRK YGQKMAKGNP CPRAYYRCTM  300
AVGCPVRKQV QRSADDKTVL ITSYEGNHNH PLPPAATAMA NTTSAAAAML LSGSAASKES  360
LTNSAGYYSS TIPYASMATL SASAPFPTIT LDLTQNPNNA AMQLHRVPPG HGGATFPLPL  420
HAAASGGPHL LGHPLFFQQK LLPPQALMPL LQRQPSSMVE TVSAAIASDP NFTAALAAAI  480
SSIIGVPRGG NDGNNNNSGS GAIPGSPQLP QSCTTFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21259335176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.530110.0cotyledon| hypocotyl| meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G224700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150376e-64AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006577185.10.0probable WRKY transcription factor 47 isoform X2
TrEMBLK7KGH00.0K7KGH0_SOYBN; Uncharacterized protein
STRINGGLYMA03G38360.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-61WRKY family protein