PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G224700.3.p
Common NameGLYMA_03G224700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 504aa    MW: 54626 Da    PI: 6.9286
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G224700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30257315259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+rsa+d++v+++ Yeg+Hnh+
  Glyma.03G224700.3.p 257 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRSADDKTVLITSYEGNHNHP 315
                          7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-32241317IPR003657WRKY domain
SuperFamilySSF1182903.66E-27249317IPR003657WRKY domain
PROSITE profilePS5081129.78251317IPR003657WRKY domain
SMARTSM007744.3E-36256316IPR003657WRKY domain
PfamPF031062.0E-26258315IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MPTLTIPIYF FFLFSLCISI SPNTYMDNRH HHREFTFLSS AHFLDHIDPP SIKEMDFFST  60
SSPRDHKNNT SSRDTNDDHY QNRDDQHDTH DRHGSPTRVI DHRVNTGLNL TCASAGVTKA  120
ENGENPETEL SSLESELLRL QEENNKLRNV LDHITKSYTQ LQAQLFIALQ NLPQNMETKI  180
VDPGTSRKLD VVNDASVSDE KTDQDVSVSR SNNAESWGSS KLEEQPKTTA EQLPADQIPL  240
RKARVSVRAR SEAPMISDGC QWRKYGQKMA KGNPCPRAYY RCTMAVGCPV RKQVQRSADD  300
KTVLITSYEG NHNHPLPPAA TAMANTTSAA AAMLLSGSAA SKESLTNSAG YYSSTIPYAS  360
MATLSASAPF PTITLDLTQN PNNAAMQLHR VPPGHGGATF PLPLHAAASG GPHLLGHPLF  420
FQQKLLPPQA LMPLLQRQPS SMVETVSAAI ASDPNFTAAL AAAISSIIGV PRGGNDGNNN  480
NSGSGAIPGS PQLPQSCTTF STN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21243319176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.530110.0cotyledon| hypocotyl| meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G224700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1397455e-43AC139745.35 Medicago truncatula clone mth2-17d15, complete sequence.
GenBankAC1758295e-43AC175829.3 Medicago truncatula chromosome 7 BAC clone mth2-24p18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006577185.10.0probable WRKY transcription factor 47 isoform X2
TrEMBLA0A0R0KN510.0A0A0R0KN51_SOYBN; Uncharacterized protein
STRINGGLYMA03G38360.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.19e-61WRKY family protein