PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G252100.1.p
Common NameGLYMA_03G252100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Whirly
Protein Properties Length: 243aa    MW: 26998.7 Da    PI: 9.3461
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G252100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly185.31.1e-57692022137
               Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91 
                          vyk+kaa+++ + +ptf++ldsg+++++r+G++++ ++ +++erkydW+k+q+falsatev++l+ + +++sc+ffhdp++ +sn+G+vr
  Glyma.03G252100.1.p  69 VYKGKAAFSLIPCLPTFTKLDSGTVVVDRRGSIMMSFMHSIGERKYDWDKRQKFALSATEVGSLITMDAQDSCDFFHDPSMLSSNAGQVR 158
                          9***************************************************************************************** PP

               Whirly  92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                          k+l+++P+++  G+fv+l+v n+l++++++fsvPv+ aefav++++
  Glyma.03G252100.1.p 159 KSLSIKPHAN--GYFVSLTVVNNLLNTKDYFSVPVTTAEFAVMKTA 202
                          ********97..69******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.2E-7156221IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544473.14E-5960221IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.8E-5569201IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MFTLSRVFPL TSPSRHRLLE VLSSRKVEVG DRLRQEGRDF TYSAAISTAT NNYAAKGHAS  60
DRIFAPYTVY KGKAAFSLIP CLPTFTKLDS GTVVVDRRGS IMMSFMHSIG ERKYDWDKRQ  120
KFALSATEVG SLITMDAQDS CDFFHDPSML SSNAGQVRKS LSIKPHANGY FVSLTVVNNL  180
LNTKDYFSVP VTTAEFAVMK TACTFALPHI MGWDQITNQQ SRGIDGLQAK GDSKVSELEW  240
ER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A4e-83602198169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B4e-83602198169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C4e-83602198169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D4e-83602198169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.573070.0stem
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G252100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0921460.0BT092146.1 Soybean clone JCVI-FLGm-10O7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341889.10.0single-stranded DNA-bindig protein WHY2-like protein
RefseqXP_028226778.10.0single-stranded DNA-binding protein WHY2, mitochondrial-like
SwissprotD9J0342e-86WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLI1JRU00.0I1JRU0_SOYBN; Uncharacterized protein
STRINGGLYMA03G41270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Representative plantOGRP23161635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-86WHIRLY 2