PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G258100.1.p
Common NameGLYMA_03G258100, LOC100819439
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 551aa    MW: 61741.7 Da    PI: 5.8648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G258100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-13389435455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  ++ YI++Lq
  Glyma.03G258100.1.p 389 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDTIAYINELQ 435
                          799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.9E-5560249IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.29E-18384450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.149385434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-14388439No hitNo description
Gene3DG3DSA:4.10.280.108.5E-18389449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10389435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-16391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MYFISVEEMK VDAGLGRVVW DDEDKAMLGA VLGGRALEFL MTNSVPNESV LMAVGSDEGL  60
QKKLSDLVER PHVSNFSWNY AIFWQLSQSK SGDWVLGWGD GCCREPNEEE EEGAVTVRRR  120
TLRVDEEEMQ QRMRKLVLQK LHTTFGGEDD DNYAFGLDHV TDTEMFFLAS MYFSFPRGHG  180
APGKCFASGN HFWLKSVSVS DHCVRSSLAN SAGIQTIVLV PTDLGVVELG SVRMLPESFE  240
LLQAVKSVFS TPIPKVLVNT IRNQTHFREK LAVRKMEDNR PWNNNNVSFP NVRSNGLHVS  300
SCWPVNSGLR QPAPRVVAEL ANGVRQDLRL SNSYEPQRQV QMQIDFSGGT SRPSDVEASC  360
KEEQPSVADE RKPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRS VVPNISKMDK  420
ASLLGDTIAY INELQAKVKI MEAERERFES ISNQEKEAPA DVDIQAVQDD EVIVRVSCPL  480
DNHPLSKVIQ TFNQTQISVV ESKLASANDA IFHTFVIKSQ GSEQLTKDKL IAVFSPTESN  540
SLQPLSSVGW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-29383445264Transcription factor MYC2
5gnj_B5e-29383445264Transcription factor MYC2
5gnj_E5e-29383445264Transcription factor MYC2
5gnj_F5e-29383445264Transcription factor MYC2
5gnj_G5e-29383445264Transcription factor MYC2
5gnj_I5e-29383445264Transcription factor MYC2
5gnj_M5e-29383445264Transcription factor MYC2
5gnj_N5e-29383445264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370378RKPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.626080.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G258100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520875.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLK7KH360.0K7KH36_SOYBN; Uncharacterized protein
STRINGGLYMA03G41901.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-180bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]