PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G258700.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 246aa    MW: 27769.2 Da    PI: 7.5002
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G258700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-072272348
                         -HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                         +W++ ++t g+ R++k+c++rw +yl
  Glyma.03G258700.1.p  2 QWRSLPKTAGLLRCGKSCRLRWMNYL 27
                         5*********99************97 PP
2Myb_DNA-binding54.43e-173378148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+ T+eEd+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l
  Glyma.03G258700.1.p 33 RGNITPEEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 78
                         7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.088127IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-13239IPR009057Homeodomain-like
SuperFamilySSF466893.04E-221488IPR009057Homeodomain-like
PROSITE profilePS5129427.3572882IPR017930Myb domain
SMARTSM007177.9E-173280IPR001005SANT/Myb domain
PfamPF002491.3E-153378IPR001005SANT/Myb domain
CDDcd001677.07E-133778No hitNo description
Gene3DG3DSA:1.10.10.602.2E-234078IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
GQWRSLPKTA GLLRCGKSCR LRWMNYLRPD IKRGNITPEE DDLIIRMHSL LGNRWSLIAG  60
RLPGRTDNEI KNYWNTHLSK KLRNQGTDPN THDKLTEAPE KKKGRKKNKQ KSTENNKGSE  120
KTLVYLPKPI RVKALSSCIP RTDSTLTLDS NSATTASTSQ EKVQSPEAET KEVNMVWGVS  180
DNIGDNGGIG IFFGEDHDLV NSASYMECYS DDHDTLEKLY EEYLQLLNVE EKPDELDSFA  240
QSLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-20148240108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.238080.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G258700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028226877.10.0transcription factor MYB8-like
TrEMBLA0A0R0KQ120.0A0A0R0KQ12_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA03G41965.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-54myb domain protein 4