PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G258700.2.p
Common NameGLYMA_03G258700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 223aa    MW: 25114 Da    PI: 5.4186
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G258700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171055148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+ T+eEd+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l
  Glyma.03G258700.2.p 10 RGNITPEEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 55
                         7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-26159IPR009057Homeodomain-like
SuperFamilySSF466891.15E-16165IPR009057Homeodomain-like
PROSITE profilePS5129427.357559IPR017930Myb domain
SMARTSM007177.9E-17957IPR001005SANT/Myb domain
PfamPF002491.1E-151055IPR001005SANT/Myb domain
CDDcd001671.76E-131455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MNYLRPDIKR GNITPEEDDL IIRMHSLLGN RWSLIAGRLP GRTDNEIKNY WNTHLSKKLR  60
NQGTDPNTHD KLTEAPEKKK GRKKNKQKST ENNKGSEKTL VYLPKPIRVK ALSSCIPRTD  120
STLTLDSNSA TTASTSQEKV QSPEAETKEV NMVWGVSDNI GDNGGIGIFF GEDHDLVNSA  180
SYMECYSDDH DTLEKLYEEY LQLLNVEEKP DELDSFAQSL LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1425951108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.238080.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G258700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0292612e-61AB029261.1 Glycine max gene for GmMYB4, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028226877.11e-163transcription factor MYB8-like
TrEMBLK7KH411e-163K7KH41_SOYBN; Uncharacterized protein
STRINGGLYMA03G41965.11e-163(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-37myb domain protein 3