PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G263700.1.p
Common NameGLYMA_03G263700, Glyma03g42450.1
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 346aa    MW: 38103.1 Da    PI: 4.7758
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G263700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1999148255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Glyma.03G263700.1.p  99 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 148
                          69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-3799162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3299157IPR001471AP2/ERF domain
PROSITE profilePS5103224.09299156IPR001471AP2/ERF domain
CDDcd000181.51E-3299158No hitNo description
SuperFamilySSF541716.28E-2299156IPR016177DNA-binding domain
PfamPF008477.4E-12100148IPR001471AP2/ERF domain
PRINTSPR003679.6E-12100111IPR001471AP2/ERF domain
PRINTSPR003679.6E-12122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MCGGAIISDF IPAAAIAGSR RLTADYLWPD LKKRKSDLDV DFEADFRDFK DDSDIDDDDD  60
DHQVKPFAFA ASSRLSTAAK SVAFQGRAEI SANRKRKNQY RGIRQRPWGK WAAEIRDPRK  120
GVRVWLGTFN TAEEAARAYD AEARRIRGKK AKVNFPEAPG TSSVKRSKVN PQENLKTVQP  180
NLGHKFSAGN NHMDLVEQKP LVSQYANMAS FPGSGNGLRS LPSSDDATLY FSSDQGSNSF  240
DYAPEISSML SAPLDCESHF VQNANQQQPN SQNVVSIEDD SAKTLSEELV DIESELKFFQ  300
MPYLEGSWGD TSLESLLSGD TTQDGGNLMN LWCFDDIPSM AGGVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2099156563ATERF1
3gcc_A2e-2099156563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.310630.0cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| pod| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G263700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310750.0KT031075.1 Glycine max clone HN_CCL_34 AP2-EREBP transcription factor (Glyma03g42450.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238300.20.0EREBP/AP2 transcription factor
TrEMBLA0A0K2CT150.0A0A0K2CT15_SOYBN; AP2-EREBP transcription factor (Fragment)
STRINGGLYMA03G42450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-57related to AP2 12
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]