PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G009300.1.p

Common Name

GLYMA_04G009300

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 211aa MW: 23087.5 Da PI: 7.9448

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G009300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	82.8	8.6e-26	12	62	3	53
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerq 53 s +++C+dCGnqakk+C+++RCRtCCk++gf+C+th+kstW p+++ r r+ Glyma.04G009300.1.p 12 SRGSKCHDCGNQAKKECSYSRCRTCCKNKGFHCQTHIKSTWTPVDNIRRRH 62 56789***************************************9877764 PP
2	DUF702	74.2	4e-23	66	126	94	154
DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++ + ++P +s+a+frcv+v+s+dd+ e+aYqt+v+igGhvf+G+LydqG+++ Glyma.04G009300.1.p 66 NHNPYSGLELKFPGATNSMAIFRCVKVRSMDDAVYEIAYQTSVNIGGHVFNGLLYDQGPDQ 126 44444445567************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.8E-21	14	62	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.9E-24	16	55	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	1.5E-18	75	125	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	5.5E-21	76	124	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MQRATQQGIS SSRGSKCHDC GNQAKKECSY SRCRTCCKNK GFHCQTHIKS TWTPVDNIRR 60 RHIPQNHNPY SGLELKFPGA TNSMAIFRCV KVRSMDDAVY EIAYQTSVNI GGHVFNGLLY 120 DQGPDQSYNN NCKGESSTSL VDQQQNNLGF VNINNGSIQS RDSSGASASA TMASVGPEET 180 LLTPSPYPFS LASFRSGQEA FMDGYEESTN *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G009300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014630707.1	1e-147	protein SHI RELATED SEQUENCE 3
Refseq	XP_028226972.1	1e-147	protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9SJT8	6e-42	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	K7KHH5	1e-157	K7KHH5_SOYBN; Uncharacterized protein
STRING	GLYMA04G01125.1	1e-158	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41
Representative plant	OGRP1313	15	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	7e-44	SHI-related sequence3

Link Out ? help Back to Top
Phytozome	Glyma.04G009300.1.p