PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G009300.2.p

Common Name

GLYMA_04G009300, LOC106798607

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 201aa MW: 21976.4 Da PI: 8.6353

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G009300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	82.8	8.5e-26	12	62	3	53
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerq 53 s +++C+dCGnqakk+C+++RCRtCCk++gf+C+th+kstW p+++ r r+ Glyma.04G009300.2.p 12 SRGSKCHDCGNQAKKECSYSRCRTCCKNKGFHCQTHIKSTWTPVDNIRRRH 62 56789***************************************9877764 PP
2	DUF702	74.3	3.6e-23	66	126	94	154
DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++ + ++P +s+a+frcv+v+s+dd+ e+aYqt+v+igGhvf+G+LydqG+++ Glyma.04G009300.2.p 66 NHNPYSGLELKFPGATNSMAIFRCVKVRSMDDAVYEIAYQTSVNIGGHVFNGLLYDQGPDQ 126 44444445567************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.4E-21	14	62	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.3E-24	16	55	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	1.3E-18	75	125	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	5.0E-21	76	124	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MQRATQQGIS SSRGSKCHDC GNQAKKECSY SRCRTCCKNK GFHCQTHIKS TWTPVDNIRR 60 RHIPQNHNPY SGLELKFPGA TNSMAIFRCV KVRSMDDAVY EIAYQTSVNI GGHVFNGLLY 120 DQGPDQSYNN NCKGESSTSL VDQQQNNLGF VNINNGSIQS RDSSGASASA TMASVGPEET 180 LLTPSPYPFS LASFRSGMPY *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G009300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014630707.1	1e-150	protein SHI RELATED SEQUENCE 3
Refseq	XP_028226972.1	1e-150	protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9SJT8	5e-42	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	A0A445KU79	1e-149	A0A445KU79_GLYSO; Protein SHI RELATED SEQUENCE 3
TrEMBL	K7KHH6	1e-149	K7KHH6_SOYBN; Uncharacterized protein
STRING	GLYMA04G01125.1	1e-147	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	5e-44	SHI-related sequence3

Link Out ? help Back to Top
Phytozome	Glyma.04G009300.2.p
Entrez Gene	106798607