PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G012600.2.p
Common NameGLYMA_04G012600, LOC100805232
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 95aa    MW: 10704.1 Da    PI: 9.4584
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G012600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-091559345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                          WT+   + + +a +++ ++   +W+ +a+ +g g+++ ++k ++q
  Glyma.04G012600.2.p 15 CWTPKQNKVFEKALAKYDKDtpdRWHNVAKAIG-GKSEDDVKRHYQ 59
                         6********************************.***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.2E-71264IPR001005SANT/Myb domain
SuperFamilySSF466894.34E-131470IPR009057Homeodomain-like
PfamPF002491.9E-71559IPR001005SANT/Myb domain
CDDcd001672.30E-71662No hitNo description
PROSITE profilePS500906.5391662IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.1E-51662IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASSTLSKQK PYDSCWTPKQ NKVFEKALAK YDKDTPDRWH NVAKAIGGKS EDDVKRHYQI  60
LLEDLRHIES GHVPIPNYKS TPTTFPLSTT LVGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-29381276RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G012600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150352e-75AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006577923.18e-66protein RADIALIS-like 3 isoform X2
RefseqXP_028226976.18e-66protein RADIALIS-like 3 isoform X2
SwissprotQ1A1732e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A445KUU82e-64A0A445KUU8_GLYSO; Protein RADIALIS-like 6 isoform B
TrEMBLK7KHJ62e-64K7KHJ6_SOYBN; Uncharacterized protein
STRINGGLYMA04G01410.23e-65(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-35RAD-like 6