PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G022100.1.p

Common Name

bZIP46, GLYMA_04G022100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 185aa MW: 20630.2 Da PI: 8.6289

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G022100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.9	1.1e-13	110	159	4	53
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 ++r r +kNRe+A rsR+RK+a+ + Le +++ L++eN++Lk +l+el+ Glyma.04G022100.1.p 110 DQRHARIIKNRESAVRSRARKQAYRKGLEVEIARLTEENSRLKRQLKELQ 159 578999*************************************9999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-10	107	171	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.254	109	159	IPR004827	Basic-leucine zipper domain
CDD	cd14707	8.99E-24	111	165	No hit	No description
Pfam	PF00170	1.2E-10	111	159	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.7E-12	112	160	No hit	No description
SuperFamily	SSF57959	2.13E-10	112	159	No hit	No description
PROSITE pattern	PS00036	0	115	129	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MASWPPKPTE IFCVHAREKA MASSPCDCWP HLSPPSSIEH VWNDIKLDSL SNSPVDIDFN 60 NNHSVSDSSF LNLTSTSSSV FHKHDHDHSL LSVSNTSFEA SGSKKTTLLD QRHARIIKNR 120 ESAVRSRARK QAYRKGLEVE IARLTEENSR LKRQLKELQC CLSSSDNPPT PRMAALCRTS 180 SSPF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.36040	0.0	cotyledon

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G022100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT099310	3e-63	BT099310.1 Soybean clone JCVI-FLGm-13N17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001236963.1	1e-133	bZIP transcription factor bZIP46
Refseq	XP_028227447.1	1e-133	protein FD-like
TrEMBL	A0A445KUK1	1e-131	A0A445KUK1_GLYSO; Protein FD
TrEMBL	Q0GPI1	1e-131	Q0GPI1_SOYBN; BZIP transcription factor bZIP46
STRING	GLYMA04G02420.1	1e-132	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16339	7	9
Representative plant	OGRP9528	5	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	5e-18	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Glyma.04G022100.1.p
Entrez Gene	778127

Publications ? help Back to Top
Liao Y, et al. Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. Planta, 2008. 228(2): p. 225-40 [PMID:18365246]