PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G027000.2.p

Common Name

GLYMA_04G027000, LOC100785978

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

DBB

Protein Properties

Length: 195aa MW: 21397.3 Da PI: 7.2577

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G027000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.7	4.3e-07	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++++++fC+ ++ lC+ C H+ H+ Glyma.04G027000.2.p 4 HCDVCNKHQASFFCTADEAALCDGCDHRVHHAnklaskHQ 43 7****99*****************964446776776 PP
2	zf-B_box	24.7	4.9e-08	56	95	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++e ++ fC++++ lC++C + +H+ H Glyma.04G027000.2.p 56 PLCDVCQERRAFVFCQQDRAILCKECDVPIHSAndltknH 95 57*****************************655555556 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.879	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.74E-5	3	47	No hit	No description
Pfam	PF00643	2.0E-5	4	44	IPR000315	B-box-type zinc finger
SMART	SM00336	1.7E-6	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	9.6E-15	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.513	53	100	IPR000315	B-box-type zinc finger
CDD	cd00021	3.50E-8	56	100	No hit	No description
Pfam	PF00643	2.6E-6	56	96	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009640	Biological Process	photomorphogenesis
GO:0005634	Cellular Component	nucleus
GO:0000989	Molecular Function	transcription factor activity, transcription factor binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MKIHCDVCNK HQASFFCTAD EAALCDGCDH RVHHANKLAS KHQRFSLTHP SAKHFPLCDV 60 CQERRAFVFC QQDRAILCKE CDVPIHSAND LTKNHSRFLL TGIKFSASAT PYDYSSPPPP 120 PPPPPPKRNP VLDSPSTPSP PKPGGNSLTN EEEPGFTGSS ISEYLINSIP GMKFEDFLDS 180 HSLPFACSKQ LIIV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.44981	0.0	flower\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269\|PubMed:17965270, ECO:0000269\|PubMed:21070414}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G027000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	2e-49	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006577979.1	1e-141	B-box zinc finger protein 21 isoform X2
Swissprot	Q9LQZ7	4e-62	BBX21_ARATH; B-box zinc finger protein 21
TrEMBL	I1JT59	1e-139	I1JT59_SOYBN; Uncharacterized protein
STRING	GLYMA04G02960.1	1e-137	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	2e-59	salt tolerance homolog2

Link Out ? help Back to Top
Phytozome	Glyma.04G027000.2.p
Entrez Gene	100785978

Publications ? help Back to Top
Xu D, et al. BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60 [PMID:27325768] Xu DB, et al. The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis. Mol Plant, 2017. 10(9): p. 1206-1223 [PMID:28827171] Xu D,Jiang Y,Li J,Holm M,Deng XW The B-Box Domain Protein BBX21 Promotes Photomorphogenesis. Plant Physiol., 2018. 176(3): p. 2365-2375 [PMID:29259103] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209] Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum. Plant Physiol., 2018. 177(1): p. 369-380 [PMID:29555784] Kang X, et al. HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture. Plant Cell Environ., 2018. 41(8): p. 1912-1925 [PMID:29748960]