PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G035700.1.p
Common NameGLYMA_04G035700, LOC100804354
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 332aa    MW: 36637 Da    PI: 7.8985
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G035700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.3e-32148201255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Glyma.04G035700.1.p 148 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLSHVKSHLQMYRT 201
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-28145202IPR009057Homeodomain-like
SuperFamilySSF466892.33E-15146202IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23148201IPR006447Myb domain, plants
PfamPF002492.0E-7149200IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MYTTSHTEMP TFAPLPEPDL SLNISPPFTS DSDAKKVEIS CNGLLTLTTK TLYNDMCSTS  60
DSGSSGSDLS HENGFFGHTD TAYNLGHHEP TLSLGIETTN SNPYPVQQGA LSRNNFSHFH  120
NYQPHSNTLD FKRNARVIHG VKRNARAPRM RWTTTLHAHF VHAVQLLGGH ERATPKSVLE  180
LMNVKDLTLS HVKSHLQMYR TVKSSDKGSA GYGQTGIGLS QKPGIVDLYG VLACERANLP  240
QPLLKSQRAS WQSSIETNSI NYTQNPIINS MYSHLKGNQT MVGGQHYECL SNCMKEKLDS  300
CSLSRSDMTL DLEFTLGRST SCKQTTLNQE N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-17149203458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.202581e-60cotyledon| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G035700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523587.20.0probable transcription factor KAN4
RefseqXP_014629932.10.0probable transcription factor KAN4
RefseqXP_028227604.10.0probable transcription factor KAN4
TrEMBLA0A445KVM70.0A0A445KVM7_GLYSO; Putative transcription factor KAN4
TrEMBLK7KHW60.0K7KHW6_SOYBN; Uncharacterized protein
STRINGGLYMA04G03801.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.12e-50G2-like family protein