PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G037900.1.p
Common NameGLYMA_04G037900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 186aa    MW: 21100.1 Da    PI: 4.9481
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G037900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.6e-13961741298
                          HTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  12 ksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++ r+  lp +f+++  +   ++  +tl de+g +++  +    ++ +  l++GW++F+ a++L +gD ++F+l++r++f  +v ++r
  Glyma.04G037900.1.p  96 TNTRMgGLPVHFCNSLPK---KDEVVTLVDEDGIEYSTIY--LAGKTG--LSGGWRGFAIAHDLTDGDALIFQLIKRTTF--KVYIVR 174
                          44444489*****77643...3458***************..555544..*************************98888..888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-144565IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.95586176IPR003340B3 DNA binding domain
SMARTSM010191.6E-1294176IPR003340B3 DNA binding domain
PfamPF023624.0E-1196175IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-15100176IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-14102177IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-17103174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MTDECGLETT LEKHETYDKH RDYANRVYAS DEVREKAEKL MSGLDSEYPT FIKSMLQKLL  60
DLFKLLCFDN HGCFLIYFEF CANLNEVKGV QSVYKTNTRM GGLPVHFCNS LPKKDEVVTL  120
VDEDGIEYST IYLAGKTGLS GGWRGFAIAH DLTDGDALIF QLIKRTTFKV YIVRADCPPE  180
DKQLE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G037900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528263.13e-70B3 domain-containing protein At5g42700
RefseqXP_006581238.13e-70B3 domain-containing protein At5g42700
RefseqXP_028234881.13e-70B3 domain-containing protein At5g42700-like
RefseqXP_028234882.13e-70B3 domain-containing protein At5g42700-like
RefseqXP_028234883.13e-70B3 domain-containing protein At5g42700-like
TrEMBLA0A0R0K3F61e-135A0A0R0K3F6_SOYBN; Uncharacterized protein
STRINGGLYMA06G04200.31e-69(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-36B3 family protein