PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G039500.1.p
Common NameGLYMA_04G039500, LOC100815041
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 265aa    MW: 30159 Da    PI: 7.4607
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G039500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08159199954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Glyma.04G039500.1.p 159 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 199
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14151219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14154209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-6160199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.61E-6173204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEQLKPEEYQ MDVMTMMLQQ LPQLSEPYTH TMEGFHPPED HFYGNNTMPL ADLIDNNNPH  60
SSMPWSSSYS FTHLPSSTIS FSNNNPIMLQ EQQQHSPSET YEDANANPYG GEKRSSMAAM  120
REMIFRMAAM QPIHIDPESV KQPKRRNVKI SKDPQSVAAR HRRERISERI RILQRLVPGG  180
TKMDTASMLD EAIHYVKFLK TQVQSLQRAS SANNNIRPLG TSTVNATGIG FPVAMSTTSN  240
STPYFPLPKP YQARHMENMH DRYD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.106150.0cotyledon| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}.
UniprotTISSUE SPECIFICITY: Flowers, especially in gynoecium. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17855426}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G039500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3369540.0DQ336954.1 Glycine max cultivar Williams 82 clone BAC gmw-74i13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523603.10.0transcription factor HEC2
RefseqXP_028226991.10.0transcription factor HEC2-like
SwissprotQ9FHA73e-45HEC1_ARATH; Transcription factor HEC1
TrEMBLA0A445KW840.0A0A445KW84_GLYSO; Transcription factor HEC1
TrEMBLQ00M800.0Q00M80_SOYBN; BHelix-loop-helix transcription factor
STRINGGLYMA04G04190.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.19e-41bHLH family protein
Publications ? help Back to Top
  1. Schlueter JA,Scheffler BE,Schlueter SD,Shoemaker RC
    Sequence conservation of homeologous bacterial artificial chromosomes and transcription of homeologous genes in soybean (Glycine max L. Merr.).
    Genetics, 2006. 174(2): p. 1017-28
    [PMID:16888343]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  4. Sparks EE,Benfey PN
    HEC of a job regulating stem cells.
    Dev. Cell, 2014. 28(4): p. 349-50
    [PMID:24576420]
  5. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]
  6. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  7. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]
  8. Gaillochet C, et al.
    Control of plant cell fate transitions by transcriptional and hormonal signals.
    Elife, 2018.
    [PMID:29058667]