PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G042300.1.p
Common NameGlyma04g04490.1
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 260aa    MW: 28587.4 Da    PI: 8.8482
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G042300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.34.2e-19550147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEde l ++v+ +G+++W+ I++ ++ gR++k+c++rw + 
  Glyma.04G042300.1.p  5 KGPWSPEEDEALRRLVQTYGPRNWSVISKSIP-GRSGKSCRLRWCNQ 50
                         79******************************.***********985 PP
2Myb_DNA-binding57.62.8e-1857101147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Glyma.04G042300.1.p  57 RRPFTAEEDEAILKAHARFGNK-WATIARFLN-GRTDNAIKNHWNST 101
                          679*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.64155IPR017930Myb domain
SuperFamilySSF466894.31E-33298IPR009057Homeodomain-like
SMARTSM007171.2E-17453IPR001005SANT/Myb domain
PfamPF002497.5E-19550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-26658IPR009057Homeodomain-like
CDDcd001673.51E-17749No hitNo description
SMARTSM007173.8E-1656104IPR001005SANT/Myb domain
PfamPF002492.6E-1557101IPR001005SANT/Myb domain
PROSITE profilePS5129421.99257106IPR017930Myb domain
CDDcd001672.42E-1359102No hitNo description
Gene3DG3DSA:1.10.10.607.6E-2459105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDRIKGPWSP EEDEALRRLV QTYGPRNWSV ISKSIPGRSG KSCRLRWCNQ LSPEVERRPF  60
TAEEDEAILK AHARFGNKWA TIARFLNGRT DNAIKNHWNS TLKRKCSEPL SEPRPLKRSA  120
TVSGSQSGSD LSDSGLPIIL ARSVSVTVAP SNHLAETASS SVTDPATLLS LSLPGFDSCD  180
GANNGPGPNQ GPSCGPFQEI PMLGSQKQLF SQEFMKVMQE MIRVEVRNYM SVLERNGVCM  240
QTDAIRNSVL ERMGIGRVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-4241063105MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-42410657159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-42410657159MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-4341063105C-Myb DNA-Binding Domain
1msf_C9e-4341063105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.238260.0cotyledon| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G042300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311880.0KT031188.1 Glycine max clone HN_CCL_41 MYB/HD-like transcription factor (Glyma04g04490.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235715.10.0MYB transcription factor MYB68
SwissprotO231603e-80MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0K2CTC60.0A0A0K2CTC6_SOYBN; MYB/HD-like transcription factor (Fragment)
STRINGGLYMA04G04490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-79myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]