PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G044800.1.p

Common Name

GLYMA_04G044800, LOC100800624

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 186aa MW: 20303.4 Da PI: 8.7907

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G044800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	86.8	2.9e-27	19	120	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++ C l+ + p++q++++ +++k+FG+s ++ +++++p ++r+++++sl++eA+ r+ +Pv+Gavg++l++++ Glyma.04G044800.1.p 19 SCNGCRVLRKRCSERCSLRSSLnwidcPHAQAHATLFLAKFFGRSDLMFFISSVPLNNRPALFQSLLFEACGRTVNPVNGAVGLLLSGNW 108 6*************************************************************************************** PP DUF260 86 qleqlkaelall 97 +++q++++++l+ Glyma.04G044800.1.p 109 HVCQAAVHTVLA 120 ***9887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.908	18	124	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-23	19	118	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MVFLYDKDSP RQQKRKSMSC NGCRVLRKRC SERCSLRSSL NWIDCPHAQA HATLFLAKFF 60 GRSDLMFFIS SVPLNNRPAL FQSLLFEACG RTVNPVNGAV GLLLSGNWHV CQAAVHTVLA 120 GGVLRPLSEV VAPSESMFSH QFQSLASDSL KRSSDATAPV MSTMVSGESE ICSSDDGKKL 180 LNLFV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	152	DSLKRS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G044800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001340895.1	1e-135	LBD domain-containing transcription factor
Refseq	XP_028227721.1	1e-135	LOB domain-containing protein 39-like
Swissprot	Q9SZE8	3e-55	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A0R0K3S6	1e-133	A0A0R0K3S6_SOYBN; Uncharacterized protein
TrEMBL	A0A445KVY6	1e-133	A0A445KVY6_GLYSO; LOB domain-containing protein 39
STRING	GLYMA04G04750.1	1e-124	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	2e-48	LOB domain-containing protein 39

Link Out ? help Back to Top
Phytozome	Glyma.04G044800.1.p
Entrez Gene	100800624