PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G050300.1.p
Common NameGLYMA_04G050300, LOC100811289
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 234aa    MW: 26146.2 Da    PI: 8.5475
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G050300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.5e-0982101626
                          -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                          C+++++ G Ck+Gd+C+FaHg
  Glyma.04G050300.1.p  82 CPDYRK-GNCKRGDTCQFAHG 101
                          ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.232365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.61E-575105IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-576102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.74277103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-781103IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-782101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4108139IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.446111135IPR000571Zinc finger, CCCH-type
SMARTSM0035614111134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MIPNVQIPTW DADGGGALSP SISSNADTCS LFSSDHFRMF QFKVRNCPRG RSHDWTECPY  60
AHPAEKARRR DPRKYHYSGT SCPDYRKGNC KRGDTCQFAH GVFECWLHPS RYRTQLCKDG  120
TNCRRRVCFF AHTSDQLRVV TDSSSSSFVS SPTSVLINSS FSDSSPYSFV RGIVKLDEEG  180
SYSGLTRCVF GSPRGGFMSV NGCEEEPAME RVESGRDIRA RIYAKLSREN SIG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.546960.0cotyledon| hypocotyl| root| seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G050300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0957360.0BT095736.1 Soybean clone JCVI-FLGm-19F20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522232.11e-173zinc finger CCCH domain-containing protein 23
SwissprotO823073e-76C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLI1JTV71e-172I1JTV7_SOYBN; Uncharacterized protein
STRINGGLYMA04G05290.11e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.22e-65C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]