PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G051000.1.p
Common NameGLYMA_04G051000, LOC100795143
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 226aa    MW: 24773.8 Da    PI: 10.1117
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G051000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-14113157347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+++++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
  Glyma.04G051000.1.p 113 PWTEEEHQIFLIGLEKLGKGNWRGISRSFVTTRTPTQVASHAQKY 157
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.614522IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.987106162IPR017930Myb domain
SuperFamilySSF466897.18E-17108162IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-17109161IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-11110156IPR009057Homeodomain-like
SMARTSM007171.1E-9110160IPR001005SANT/Myb domain
PfamPF002498.1E-12113157IPR001005SANT/Myb domain
CDDcd001673.27E-9113157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006338Biological Processchromatin remodeling
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0035066Biological Processpositive regulation of histone acetylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0004402Molecular Functionhistone acetyltransferase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGIARKCSYC GNLGHNARTC KSTLSQGQLK LFGVQLDVSS FSSSSNSFSS SPSYSAMKRS  60
FSTNYLLSSW PSSSVPSSFS SPSLLGANEN LDGYLLNANS LISTIQDAKK GVPWTEEEHQ  120
IFLIGLEKLG KGNWRGISRS FVTTRTPTQV ASHAQKYYLR QSQNSFNKRK HRPSLLDNWL  180
SLRPHSVLNW ATTSTSTNCT VQRANPDLDL KLATPTPFEL PVADT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G051000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523642.11e-165probable transcription factor At5g61620 isoform X1
RefseqXP_028227792.11e-165probable transcription factor At5g61620 isoform X1
TrEMBLA0A445KWJ71e-163A0A445KWJ7_GLYSO; Putative transcription factor
TrEMBLI1JTW41e-163I1JTW4_SOYBN; Uncharacterized protein
STRINGGLYMA04G05390.11e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151421013
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-42MYB_related family protein