PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G051000.2.p
Common NameGLYMA_04G051000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 189aa    MW: 20833.4 Da    PI: 10.5328
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G051000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-14113157347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+++++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
  Glyma.04G051000.2.p 113 PWTEEEHQIFLIGLEKLGKGNWRGISRSFVTTRTPTQVASHAQKY 157
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.614522IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.987106162IPR017930Myb domain
SuperFamilySSF466895.24E-17108162IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-17109161IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.5E-12110156IPR009057Homeodomain-like
SMARTSM007171.1E-9110160IPR001005SANT/Myb domain
PfamPF002495.9E-12113157IPR001005SANT/Myb domain
CDDcd001672.30E-9113157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006338Biological Processchromatin remodeling
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0035066Biological Processpositive regulation of histone acetylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0004402Molecular Functionhistone acetyltransferase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGIARKCSYC GNLGHNARTC KSTLSQGQLK LFGVQLDVSS FSSSSNSFSS SPSYSAMKRS  60
FSTNYLLSSW PSSSVPSSFS SPSLLGANEN LDGYLLNANS LISTIQDAKK GVPWTEEEHQ  120
IFLIGLEKLG KGNWRGISRS FVTTRTPTQV ASHAQKYYLR QSQNSFNKRK HRPSLLDNVS  180
KLKHFSFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G051000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014630715.11e-127probable transcription factor At5g61620 isoform X2
RefseqXP_028227793.11e-127probable transcription factor At5g61620 isoform X2
TrEMBLI1JTW51e-134I1JTW5_SOYBN; Uncharacterized protein
STRINGGLYMA04G05390.19e-97(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-43MYB_related family protein