PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G061300.1.p
Common NameGLYMA_04G061300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 236aa    MW: 26724.7 Da    PI: 9.1753
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G061300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.21.4e-27102161158
                          ---SS-EEEEEEE--.TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKev.kgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                          ++Dgy+W+KYGqK+v k+++ pr+Y++C+ a +Cpvkk+v+rs +d+++++ tYeg+Hnh
  Glyma.04G061300.1.p 102 VKDGYQWKKYGQKKVtKDNPSPRAYFKCSLApSCPVKKRVQRSIQDKSILVATYEGKHNH 161
                          58**********998689***********999**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-2696162IPR003657WRKY domain
PROSITE profilePS5081122.79197164IPR003657WRKY domain
SuperFamilySSF1182902.62E-2299163IPR003657WRKY domain
SMARTSM007745.5E-28102163IPR003657WRKY domain
PfamPF031061.6E-22103161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
LVQLGRSSYI APIMDQEVET LEAKLQRVKE DNRTLRVMLE TLSSKCEKLQ SHLQEINNEE  60
QQVGTKSDQS GSVLLARPEF SMAQKPSQIF FKTHPKDNSL MVKDGYQWKK YGQKKVTKDN  120
PSPRAYFKCS LAPSCPVKKR VQRSIQDKSI LVATYEGKHN HGVFHDLLKP SSSIPETSIM  180
INNLPMTNMP NDKDTVNIDL ALCNWDQTDI RLCDEMLSNR TTVAAKAKLK DMQVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-201011611371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G061300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028227000.11e-150probable WRKY transcription factor 40
TrEMBLA0A0R0KCL71e-175A0A0R0KCL7_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA04G06470.21e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Representative plantOGRP1149547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-38WRKY DNA-binding protein 40