PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G078300.3.p
Common NameGLYMA_04G078300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 218aa    MW: 23941.6 Da    PI: 6.2832
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G078300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1444.9e-14128179354
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                          + kr rrk +NR +ArrsR+RK+a++ eLe  v++L+ eN +L k+    ++
  Glyma.04G078300.3.p 128 DMKRLRRKVSNRDSARRSRRRKQAQLSELELQVEKLKVENATLYKQFTDASQ 179
                          68*****************************************987665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-12126190IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.059128191IPR004827Basic-leucine zipper domain
PfamPF001709.0E-12129174IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.2E-10130168No hitNo description
SuperFamilySSF579595.06E-10130179No hitNo description
PROSITE patternPS000360133148IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.101.7E-4169201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MATTTTEFDL DYEFPDLDYD LRYLSLAGID ALTAFQNLLP DAAMTSFSAC GLIDPHCSQN  60
LTPMHSTITA TIDSQSTICA TSNVGSPISA NKPEGRENRT KGATSGSSEP SDEDDEAGAC  120
EQSTNPADMK RLRRKVSNRD SARRSRRRKQ AQLSELELQV EKLKVENATL YKQFTDASQH  180
FREADTNNRV LKSDVEALRA KVRKGVVTKN KGSLVFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132148RRKVSNRDSARRSRRRK
2142149RRSRRRKQ
3144149SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.360430.0hypocotyl| pod| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G078300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983510.0BT098351.1 Soybean clone JCVI-FLGm-23I3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345650.11e-148bZIP transcription factor 61
RefseqXP_028228162.11e-148basic leucine zipper 9-like isoform X1
SwissprotQ6H5008e-48RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A0R0K9U51e-160A0A0R0K9U5_SOYBN; Uncharacterized protein
STRINGGLYMA04G08290.31e-146(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-24basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]