PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G078300.5.p
Common NameGLYMA_04G078300, LOC780555
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 258aa    MW: 28252.3 Da    PI: 7.5058
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G078300.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.66.5e-1485136354
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                          + kr rrk +NR +ArrsR+RK+a++ eLe  v++L+ eN +L k+    ++
  Glyma.04G078300.5.p  85 DMKRLRRKVSNRDSARRSRRRKQAQLSELELQVEKLKVENATLYKQFTDASQ 136
                          68*****************************************987665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-1283147IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.05985148IPR004827Basic-leucine zipper domain
PfamPF001704.2E-1186131IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.47E-1087136No hitNo description
Gene3DG3DSA:1.20.5.1707.0E-887122No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.102.2E-4123157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTSFSACGLI DPHCSQNLTP MHSTITATID SQSTICATSN VGSPISANKP EGRENRTKGA  60
TSGSSEPSDE DDEAGACEQS TNPADMKRLR RKVSNRDSAR RSRRRKQAQL SELELQVEKL  120
KVENATLYKQ FTDASQHFRE ADTNNRVLKS DVEALRAKVK LAEDMVTRSS FTTLNYQLLQ  180
TQQHQMSTPP QLNTTNLRRM AHVSPTITVH GNDASYNGVT VGEQNSSALG NLDMTFNNIN  240
NGVMNNAMSC GTIWPLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189105RRKVSNRDSARRSRRRK
299106RRSRRRKQ
3101106SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.360430.0hypocotyl| pod| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G078300.5.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0966690.0BT096669.1 Soybean clone JCVI-FLGm-21C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345650.10.0bZIP transcription factor 61
RefseqXP_028228162.10.0basic leucine zipper 9-like isoform X1
RefseqXP_028228163.10.0basic leucine zipper 9-like isoform X2
SwissprotQ9FUD37e-60BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A0R0KB070.0A0A0R0KB07_SOYBN; Uncharacterized protein
TrEMBLA0A445KXF70.0A0A445KXF7_GLYSO; Basic leucine zipper 9 isoform B
TrEMBLA0A445KY360.0A0A445KY36_GLYSO; Basic leucine zipper 9 isoform A
TrEMBLI1JUQ20.0I1JUQ2_SOYBN; Uncharacterized protein
STRINGGLYMA04G08290.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-38basic leucine zipper 9
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]