PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G078600.2.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 340aa    MW: 37724.5 Da    PI: 9.2924
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G078600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.76.6e-55111381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelv++yL +k+++++++  ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  Glyma.04G078600.2.p  11 LPPGFRFHPTDEELVTCYLVNKISDSNFTG-RAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDK 99 
                          79*************************999.89***************99999************************************* PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e++++ ++el+g+kktLvfykgrap+gek++Wvmheyr+
  Glyma.04G078600.2.p 100 EIFNSeTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRI 138
                          ***9867888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-639159IPR003441NAC domain
PROSITE profilePS5100560.46711159IPR003441NAC domain
PfamPF023653.5E-2812138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEGTRAKEGT LPPGFRFHPT DEELVTCYLV NKISDSNFTG RAITDVDLNK CEPWELPGKA  60
KMGEKEWYFF SLRDRKYPTG VRTNRATNTG YWKTTGKDKE IFNSETSELI GMKKTLVFYK  120
GRAPRGEKSN WVMHEYRIHS KSSYRTNRDE WVVCRVFKKS GGAKKYHSSN HARTVNPYSL  180
EIGPSIMPPP MMQLGDPSAH FLYGRNYMNS AELAELARVL RGGGSTSSVN LPIQSQLSYP  240
TSSSAGGGGF IISGLNLNLG GGATATTQPI LRPMQPSPPV HTMAQVLDVN SSMMTTSSLG  300
AENNVGYGTE VSNNMNSHGN RYMGMDHHCM DLDNYWPSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-561016516171NO APICAL MERISTEM PROTEIN
1ut4_B1e-561016516171NO APICAL MERISTEM PROTEIN
1ut7_A1e-561016516171NO APICAL MERISTEM PROTEIN
1ut7_B1e-561016516171NO APICAL MERISTEM PROTEIN
3swm_A2e-561016519174NAC domain-containing protein 19
3swm_B2e-561016519174NAC domain-containing protein 19
3swm_C2e-561016519174NAC domain-containing protein 19
3swm_D2e-561016519174NAC domain-containing protein 19
3swp_A2e-561016519174NAC domain-containing protein 19
3swp_B2e-561016519174NAC domain-containing protein 19
3swp_C2e-561016519174NAC domain-containing protein 19
3swp_D2e-561016519174NAC domain-containing protein 19
4dul_A1e-561016516171NAC domain-containing protein 19
4dul_B1e-561016516171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G078600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-108AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523724.30.0protein CUP-SHAPED COTYLEDON 2 isoform X2
RefseqXP_028228168.10.0protein CUP-SHAPED COTYLEDON 2-like isoform X2
TrEMBLK7KIT40.0K7KIT4_SOYBN; Uncharacterized protein
STRINGGLYMA04G08320.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-104NAC domain containing protein 38