PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G078600.3.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 341aa    MW: 37852.7 Da    PI: 9.2924
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G078600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.76.6e-55111381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelv++yL +k+++++++  ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  Glyma.04G078600.3.p  11 LPPGFRFHPTDEELVTCYLVNKISDSNFTG-RAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDK 99 
                          79*************************999.89***************99999************************************* PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e++++ ++el+g+kktLvfykgrap+gek++Wvmheyr+
  Glyma.04G078600.3.p 100 EIFNSeTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRI 138
                          ***9867888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-639160IPR003441NAC domain
PROSITE profilePS5100560.73711160IPR003441NAC domain
PfamPF023653.5E-2812138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEGTRAKEGT LPPGFRFHPT DEELVTCYLV NKISDSNFTG RAITDVDLNK CEPWELPGKA  60
KMGEKEWYFF SLRDRKYPTG VRTNRATNTG YWKTTGKDKE IFNSETSELI GMKKTLVFYK  120
GRAPRGEKSN WVMHEYRIHS KSSYRTNRQD EWVVCRVFKK SGGAKKYHSS NHARTVNPYS  180
LEIGPSIMPP PMMQLGDPSA HFLYGRNYMN SAELAELARV LRGGGSTSSV NLPIQSQLSY  240
PTSSSAGGGG FIISGLNLNL GGGATATTQP ILRPMQPSPP VHTMAQVLDV NSSMMTTSSL  300
GAENNVGYGT EVSNNMNSHG NRYMGMDHHC MDLDNYWPSY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-561016616171NO APICAL MERISTEM PROTEIN
1ut4_B3e-561016616171NO APICAL MERISTEM PROTEIN
1ut7_A3e-561016616171NO APICAL MERISTEM PROTEIN
1ut7_B3e-561016616171NO APICAL MERISTEM PROTEIN
3swm_A4e-561016619174NAC domain-containing protein 19
3swm_B4e-561016619174NAC domain-containing protein 19
3swm_C4e-561016619174NAC domain-containing protein 19
3swm_D4e-561016619174NAC domain-containing protein 19
3swp_A4e-561016619174NAC domain-containing protein 19
3swp_B4e-561016619174NAC domain-containing protein 19
3swp_C4e-561016619174NAC domain-containing protein 19
3swp_D4e-561016619174NAC domain-containing protein 19
4dul_A3e-561016616171NAC domain-containing protein 19
4dul_B3e-561016616171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G078600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-108AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578207.10.0protein CUP-SHAPED COTYLEDON 3 isoform X1
RefseqXP_028228167.10.0protein CUP-SHAPED COTYLEDON 3-like isoform X1
TrEMBLK7KIT30.0K7KIT3_SOYBN; Uncharacterized protein
STRINGGLYMA04G08320.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-107NAC domain containing protein 38