PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G078600.5.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 280aa    MW: 31046 Da    PI: 9.7857
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G078600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.33.2e-3227754128
                  NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++el+g+kktLvfykgrap+gek++Wvmheyr+
  Glyma.04G078600.5.p   2 GEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSeTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRI 77 
                          578*************************************9867888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.822199IPR003441NAC domain
SuperFamilySSF1019419.68E-38299IPR003441NAC domain
PfamPF023652.5E-15677IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGEKEWYFFS LRDRKYPTGV RTNRATNTGY WKTTGKDKEI FNSETSELIG MKKTLVFYKG  60
RAPRGEKSNW VMHEYRIHSK SSYRTNRQDE WVVCRVFKKS GGAKKYHSSN HARTVNPYSL  120
EIGPSIMPPP MMQLGDPSAH FLYGRNYMNS AELAELARVL RGGGSTSSVN LPIQSQLSYP  180
TSSSAGGGGF IISGLNLNLG GGATATTQPI LRPMQPSPPV HTMAQVLDVN SSMMTTSSLG  240
AENNVGYGTE VSNNMNSHGN RYMGMDHHCM DLDNYWPSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-34110568171NO APICAL MERISTEM PROTEIN
1ut4_B3e-34110568171NO APICAL MERISTEM PROTEIN
1ut7_A3e-34110568171NO APICAL MERISTEM PROTEIN
1ut7_B3e-34110568171NO APICAL MERISTEM PROTEIN
3swm_A3e-34110571174NAC domain-containing protein 19
3swm_B3e-34110571174NAC domain-containing protein 19
3swm_C3e-34110571174NAC domain-containing protein 19
3swm_D3e-34110571174NAC domain-containing protein 19
3swp_A3e-34110571174NAC domain-containing protein 19
3swp_B3e-34110571174NAC domain-containing protein 19
3swp_C3e-34110571174NAC domain-containing protein 19
3swp_D3e-34110571174NAC domain-containing protein 19
4dul_A3e-34110568171NAC domain-containing protein 19
4dul_B3e-34110568171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G078600.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-103AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578207.10.0protein CUP-SHAPED COTYLEDON 3 isoform X1
RefseqXP_028228167.10.0protein CUP-SHAPED COTYLEDON 3-like isoform X1
TrEMBLI1JUQ50.0I1JUQ5_SOYBN; Uncharacterized protein
TrEMBLK7KIT30.0K7KIT3_SOYBN; Uncharacterized protein
STRINGGLYMA04G08320.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.25e-71NAC domain containing protein 38