PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G135400.2.p

Common Name

GLYMA_04G135400

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 277aa MW: 29841.5 Da PI: 9.4424

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G135400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.8	1e-16	65	149	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ + +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + ++ + s++p++++l+ Glyma.04G135400.2.p 65 EWSEGAVTTLLEAYEAKWVHRNRAKLKGHDWEDVAKHVsaraNSTKSPKTQTQCKNKIESMKKRYRSESATTADA-----SSWPLYSRLD 149 5***********************************87777777888999************9999984.....57**9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-20	63	150	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MEDNNNNNNK AEKQQDDSSH HPSLLLPKPN HSTINNIKED HHQSPRKLAI GGGGGGSGDR 60 LKRDEWSEGA VTTLLEAYEA KWVHRNRAKL KGHDWEDVAK HVSARANSTK SPKTQTQCKN 120 KIESMKKRYR SESATTADAS SWPLYSRLDV LLRGTGLISS SLPPPIAATA IAAPSQSPHA 180 TINNNQALVL LEPPSLAVLQ APPSVAPPPI AIAQNSHGPN GVERLLAKLP SATPSSQCLT 240 QAQTDLAHCI SPRTDLQLST TVVATQQLYI SQHFIV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.32616	1e-136	hypocotyl

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G135400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003523957.1	1e-167	trihelix transcription factor ASIL2
Refseq	XP_028228771.1	1e-167	trihelix transcription factor ASIL2-like
TrEMBL	K7KJY9	0.0	K7KJY9_SOYBN; Uncharacterized protein
STRING	GLYMA04G17330.2	1e-166	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	4e-55	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Glyma.04G135400.2.p