PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G144700.1.p
Common NameGLYMA_04G144700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 150aa    MW: 17296.9 Da    PI: 4.4865
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G144700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.31.2e-1386149164
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCka 64 
                          kfY +Y k+ GF +rk++  +  +n++i++r+fvC+k+g r++++   +++++ +r+ trt+Cka
  Glyma.04G144700.1.p  86 KFYIAYTKSHGFGIRKDYVDYD-MNHNIIMRQFVCNKKGLRDKKHLMrDNRKKDHRSLTRTNCKA 149
                          6*****************9998.7777**************99987646788889*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-1286149IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDNSNDEWFV NLEDDNDVNS SDTNSSNGSD AEVDIDVDNE EGVEDVDNEE EAKDVDCIGF  60
KLKNLKDVTT DDITPIEFSC EHNAYKFYIA YTKSHGFGIR KDYVDYDMNH NIIMRQFVCN  120
KKGLRDKKHL MRDNRKKDHR SLTRTNCKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G144700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020209499.15e-43protein FAR1-RELATED SEQUENCE 5-like, partial
TrEMBLA0A445L0981e-104A0A445L098_GLYSO; Uncharacterized protein
TrEMBLK7MS761e-104K7MS76_SOYBN; Uncharacterized protein
STRINGGLYMA18G22811.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9653634
Representative plantOGRP1143425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-07FAR1-related sequence 5