PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G145000.1.p
Common NameGLYMA_04G145000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 108aa    MW: 12060.4 Da    PI: 4.6605
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G145000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB39.31.5e-121454286
                NF-YB 42 fisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86
                         fi +v+se+++ c++e+r+ti+++ +l al+ lGf +y+e++ + 
  Glyma.04G145000.1.p  1 FINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGEYIEEVYAA 45
                         89**************************************98654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008083.3E-7130IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.2E-22191IPR009072Histone-fold
SuperFamilySSF471133.87E-20194IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
FINLVSSESN EVCNKEERRT IAPEHVLKAL GVLGFGEYIE EVYAAYEQHK LETMQDSLKG  60
AKWSNRAEMT EEEALAEQQR MFAEARARMN GGAITSKQPD AHQSLES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-2018649133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G145000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4649061e-150AF464906.1 Glycine max repressor protein (Dr1) mRNA, complete cds.
GenBankBT0898161e-150BT089816.1 Soybean clone JCVI-FLGm-2L20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984025.12e-74protein Dr1 homolog
RefseqXP_028228844.13e-74protein Dr1 homolog
SwissprotP495923e-53NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A0B2Q7826e-73A0A0B2Q782_GLYSO; Protein Dr1 like
TrEMBLK7MS804e-73K7MS80_SOYBN; Uncharacterized protein
STRINGGLYMA18G22896.17e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Representative plantOGRP34491727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.21e-55nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]