PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G150800.1.p
Common NameGLYMA_04G150800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 328aa    MW: 38060.1 Da    PI: 5.4
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G150800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.71.6e-1281155288
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                          fY+ YAk +GFsvrks+  ++ + +e+ ++tfvCs+ g++e++k            +r+gC+a+++v+ +  +g+w+vt  + eHn  
  Glyma.04G150800.1.p  81 FYCWYAKIIGFSVRKSHILRN-TCRETLQQTFVCSCVGSAEKKK------------SRCGCEAMFRVHVHFsTGRWYVTCWNFEHNNL 155
                          9****************9999.66779***********998854............57************99**************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-981154IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MESSDNFCSS INGDHEDDVI EVYDDDDDDD VDHNRVGDSD DLDNVGLEHE EEVDSEFDMG  60
KMTVEDVSRL DFCDLEIAYL FYCWYAKIIG FSVRKSHILR NTCRETLQQT FVCSCVGSAE  120
KKKSRCGCEA MFRVHVHFST GRWYVTCWNF EHNNLLLDLK LSSLLPAHRK MSATNIMQIE  180
NYRKVGIRPL HMYVAFANHY GGYDKVGFIR KDIYNQEVHM RKQHTSYASG ALKYLHDLRT  240
KDPMMYVSCT ADEGSRLQRL FWCDAERQLL YEVFGDVLTF DATYKKNKYF CPFLLEQFLE  300
AMKGKTPCSI IIDGNLAMRN VITRAIPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G150800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351390.0AC235139.1 Glycine max strain Williams 82 clone GM_WBa0065P04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006603498.11e-147protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0R0KF530.0A0A0R0KF53_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA18G39530.21e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-25FAR1-related sequence 5