PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G151100.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 233aa    MW: 26447.7 Da    PI: 4.2757
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G151100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.72.1e-111362255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ G+r+++ +g+W+ eI+d      +r   +lg++ taeeA   ++    +l+g
  Glyma.04G151100.1.p 13 KFCGIRQRP-WGKWATEIWDlA----RRMCLWLGTYETAEEAIMVYDDTIIRLRG 62
                         667******.**********54....359******************99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.12E-241269No hitNo description
Gene3DG3DSA:3.30.730.106.2E-211370IPR001471AP2/ERF domain
PROSITE profilePS5103217.8991370IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-151370IPR016177DNA-binding domain
SMARTSM003801.0E-231376IPR001471AP2/ERF domain
PfamPF008471.1E-41462IPR001471AP2/ERF domain
PRINTSPR003671.3E-61425IPR001471AP2/ERF domain
PRINTSPR003671.3E-63652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRKKIIDPSS GKKFCGIRQR PWGKWATEIW DLARRMCLWL GTYETAEEAI MVYDDTIIRL  60
RGSDALTNFM LPQRDSPSPL SVVAETPTEV CEMKVVVTEE AFNSSYDSSE DHCHHKLSSP  120
TLFRSNSSKE KFESQQKVEE VLRECEGETE TSLFEETKEE NLNLLHQSQM LGETVLFSSE  180
EGFSDESSIT LANWLIDFDR ACPSPSSLCQ VDDFFQDILL ASDPVTTTNM LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-17971164ATERF1
3gcc_A3e-17971164ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G151100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527973.11e-103pathogenesis-related genes transcriptional activator PTI6
RefseqXP_028236041.11e-103pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A0R0K8K41e-171A0A0R0K8K4_SOYBN; Uncharacterized protein
STRINGGLYMA06G13040.21e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3527422
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-25cytokinin response factor 4