PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G168300.1.p

Common Name

GLYMA_04G168300, LOC100803454

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 471aa MW: 51645.1 Da PI: 6.8296

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G168300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.5e-39	124	184	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s Glyma.04G168300.1.p 124 PDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 184 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	106	181	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	126	182	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.686	128	182	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	130	166	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MQENKDPAIK LFGQKIAFPG EADSQAIAGG ETDWPPAMDV DKDEEDFGIG NPDKDEKDKD 60 PRAEKVSEKT KEADPPPDAA DSKTSEGIQN PNTPSIDEES AKSKNDKSEN DQQENNNNKT 120 LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRYFCKACQR YWTAGGTMRN VPVGAGRRKN 180 KNSASHYRHI TISEALQAAR IDAPNGTHLL KQNGRVLSFG LDPPICDSMA SILNLTAEKK 240 GTLNNNTRNG FHTIEDQRNK DNHNNNNNNG DDCSSASSIT VSNEESGKST SQESIMVPNS 300 NGFIHQVPCI STLPWPYPFP SAAPAMCPPG FPMSFYPAAF WNIPWFPSQH SHHSAPTPRS 360 PSSGPNSPTL GKHSRVVAEK QDHLQEESPS RQRNGSVLVP KTLRIDDPSE AAKSSIWATL 420 GIKNECVTGG GMFKGFQSKK DEKDHVVEAS PVLRANPAAL SRSLNFHENS *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MQENKDPAIK LFGQKIAFPG EADSQAIAGG ETDWPPAMDV DKDEEDFGIG NPDKDEKDKD  60
PRAEKVSEKT KEADPPPDAA DSKTSEGIQN PNTPSIDEES AKSKNDKSEN DQQENNNNKT  120
LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRYFCKACQR YWTAGGTMRN VPVGAGRRKN  180
KNSASHYRHI TISEALQAAR IDAPNGTHLL KQNGRVLSFG LDPPICDSMA SILNLTAEKK  240
GTLNNNTRNG FHTIEDQRNK DNHNNNNNNG DDCSSASSIT VSNEESGKST SQESIMVPNS  300
NGFIHQVPCI STLPWPYPFP SAAPAMCPPG FPMSFYPAAF WNIPWFPSQH SHHSAPTPRS  360
PSSGPNSPTL GKHSRVVAEK QDHLQEESPS RQRNGSVLVP KTLRIDDPSE AAKSSIWATL  420
GIKNECVTGG GMFKGFQSKK DEKDHVVEAS PVLRANPAAL SRSLNFHENS *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.23212	0.0	leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269\|PubMed:19619493}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G168300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006578570.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	1e-122	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	K7KKN2	0.0	K7KKN2_SOYBN; Uncharacterized protein
STRING	GLYMA04G33410.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-121	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Glyma.04G168300.1.p
Entrez Gene	100803454

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]