PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G171600.1.p
Common NameGLYMA_04G171600, LOC100790746
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 93aa    MW: 10609.1 Da    PI: 7.3667
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G171600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.5e-0516591555
                         HHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHHH CS
                  HLH 15 riNsafeeLrellPkas...kapskKlsKaeiLekAveYIksLq 55
                         +iN+ + +L+ llP++    + ++  +s + i ++++ +I  Lq
  Glyma.04G171600.1.p 16 EINDLMLRLQALLPQLNqtsNSRASSVSVMKIMKETCSHITRLQ 59
                         7**************76465555555777789999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-61574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-61674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MPGQRNSRTS KFTESEINDL MLRLQALLPQ LNQTSNSRAS SVSVMKIMKE TCSHITRLQK  60
EVKDLGERLV QLMDSVDLSD IDEERFTRLL QQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G171600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522332.11e-60transcription factor PRE4
RefseqXP_028227074.11e-60transcription factor PRE4-like
TrEMBLA0A0B2QNX13e-59A0A0B2QNX1_GLYSO; Transcription factor PRE4
TrEMBLI1JWW83e-59I1JWW8_SOYBN; Uncharacterized protein
STRINGGLYMA04G33920.15e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106242439
Representative plantOGRP1320335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47710.15e-10BANQUO 3