PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G176900.1.p
Common NameGLYMA_04G176900, LOC100306638
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 244aa    MW: 26199.2 Da    PI: 6.6321
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G176900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.6e-11124171455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Glyma.04G176900.1.p 124 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 171
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.32E-11118175No hitNo description
SuperFamilySSF474594.06E-18118189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-18120190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-8124171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDPPLISDST FSPAYSLAEI WPGMPHFPDH SHLTATAPTK GKDSTAADEV LSSTTTANLS  60
NNDSGSNKRM KVGGSSFEND GFKAEAEASS VGGNKSSEQS NKPCEAPKPD YIHVRARRGQ  120
ATDSHSLAER ARREKISERM KILQDLVPGC NKVIGKALVL DEIINYIQSL QRQVEFLSMK  180
LEAVNSRMNT NPTIDGFPSK DVGTQPFDIA GMVFGSQAAR GYAQGSSHPG WLHMQIGGGF  240
ETT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.226010.0hypocotyl| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G176900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0908470.0BT090847.1 Soybean clone JCVI-FLGm-5B17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237962.20.0helix loop helix domain-containing protein
RefseqXP_028229159.10.0transcription factor bHLH79-like
SwissprotQ69WS31e-73BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A445L1L40.0A0A445L1L4_GLYSO; Transcription factor BHLH094
TrEMBLI1JX080.0I1JX08_SOYBN; Uncharacterized protein
STRINGGLYMA04G34660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-75BIG PETAL P